Let's be honest with ourselves here. The transfurs in changed would honestly stand no chance against the US military if the pale virus was dealt with.
Listen listen. The US military despite being depicted as dumb in movies and media really isn't. And they seriously could destroy the transfurs when stuff gets out of control only reason in they game they couldn't was because of the pale virus. And before you say guns wouldn't work yeah they won't more on the goopy ones. But the US of A has chemicals and I'm pretty sure no one except PETA would not like the US using chemical warfare against the transfurs. Ok ok let's say that for this either Lin never existed or decided to stay which would lead to the same thing. The US going over there, talking to Dr. K and then dealing with the transfurs because Dr. K wants humanity to survive and not be killed by infectious goo monsters. Let's say for this the US found a cure (like they definitely would) for the pale virus. Dr. K would not need to do his research because humanity is safe so he'd definitely help to destroy the goos so humanity stays safe. Obviously some transfurs like the yellow gas wolf in special edition wouldn't be destroyed and definitely used to have more highly trained soldiers. They would definitely know to wear hazmat suits and HEAVY I mean HEAVY protection as to not be turned. Also chemicals would work. The transfurs aren't indestructible so the US military would definitely focus on destroying them and making deals with ones that can't infect people as to find out more ways to destroy them... Also some would be publicly executed like the skunk.